Books:

1. George Em Karniadakis and Robert M. Kirby, Parallel Scientific Computing in C++ and MPI, Cambridge University  Press, UK, 628 pages, 2003.
   
   
2. Robert M. Kirby, Martin Berzins and Jan S. Hesthaven (Editors), Spectral and High Order Methods for Partial Differential Equations: Selected Papers from the ICOSAHOM'14 Conference, June 23-27, 2014, Salt Lake City, UT, USA., Lecture Notes in Computational Science and Engineering, Springer, 2015.
   
   
3. Tiago Etiene, Robert M. Kirby and Claudio Silva, An Introduction to Verification of Visualization Techniques, Morgan & Claypool Publishers, 2015.
   
   
4. Tobias Preusser, Robert M. Kirby and Torben Patz, Stochastic Partial Differential Equations for Computer Vision with Uncertain Data, Morgan & Claypool Publishers, 2017.
   

    Book Chapters:

1. R.M. Kirby, G.E. Karniadakis, O. Mikulchenko and K. Mayaram, "Integrated Simulation for MEMS: Coupling Flow-Structure-Thermal-Electrical Domains", The CRC Handbook of MEMS, CRC Press, Boca Raton, FL,  pages 5-1 - 5-25, 2001. Editor: M. Gad-el-Hak. 
   
   
2. Robert M. Kirby and George Em Karniadakis, "Under-Resolution and Diagnostics in Spectral Simulations of Complex-Geometry Flows", Turbulent Flow Computation, Kluwer Academic Publishers, The Netherlands, pages 1 - 42, 2001. Editors: D. Drikakis and B. Geurts.
   
   
3. Robert M. Kirby and George Em Karniadakis, "Spectral Element and hp Methods", Encyclopedia of Computational Mechanics, John Wiley and Sons, NY, Volume 3, Chapter 3, pages 61 - 88, 2004. Editors: E. Stein, R. de Borst and T.J.R. Hughes. 
   
   
4. Robert M. Kirby, Daniel F. Keefe and David H. Laidlaw, "Painting and Visualization", Visualization Handbook, Academic Press, pages 873 - 891, 2004. Editors:  C. Hansen and C. Johnson.
   


5. Yue Yu, Robert M. Kirby and George Em Karniadakis, "Spectral Element and hp Methods", Encyclopedia of Computational Mechanics, John Wiley and Sons, NY, 1:1-43, 2017. Editors: E. Stein, R. de Borst and T.J.R. Hughes. 
   
   

  Journal Publications:

1. I. Lomtev, R.M. Kirby, and G.E. Karniadakis, "A Discontinuous Galerkin ALE Method for Compressible Viscous Flows in Moving Domains",  Journal of Computational Physics, Vol. 155, 128-159, 1999.


2. R.M. Kirby, T.C. Warburton, I. Lomtev, and G.E. Karniadakis,  "A Discontinuous Galerkin Spectral/hp Method on Hybrid Grids",  Journal of Applied Numerical Mathematics, Vol. 33, 393-405, 1999.


3. R.M. Kirby, G.E. Karniadakis, O. Mikulchenko, and K. Mayaram, "An Integrated Simulator for Coupled Domain Problems in MEMS",  Journal of Microelectromechanical Systems, Vol. 10, 3:379-399, 2001.


4. Robert M. Kirby and George Em Karniadakis, "Coarse Resolution Turbulence Simulations With Spectral Vanishing Viscosity - Large-Eddy Simulations (SVV-LES)", Journal of Fluids Engineering, Vol. 124, 4:886-891, 2002.


5. Robert M. Kirby and George Em Karniadakis, "De-Aliasing on Non-Uniform Grids: Algorithms and Applications", Journal of Computational Physics, Vol. 191, pages 249-264, 2003. [PDF]
   


6. Robert M. Kirby and Zohar Yosibash, "Solution of von-Karman dynamic non-linear plate equations using a pseudo-spectral method", Computer Methods in Applied Mechanics and Engineering, Vol. 193/6-8, pages 575-599, 2004. [PDF]
   


7. Z. Yosibash, R.M. Kirby and D. Gottlieb, "Collocation methods for the solution of von-Karman dynamic non-linear plate systems", Journal of Computational Physics, Vol. 200, Issue 2, pages 432-461, 2004. [PDF]
   


8. Frank Stenger, Thomas Cook and Robert M. Kirby, "Sinc Solution of Biharmonic Problems", Canadian Applied Mathematics Quarterly, Vol. 12, Number 3, pages 391-413, 2004. [PDF]
   


9. Zohar Yosibash and Robert M. Kirby, "Dynamic response of various  von-Karman non-linear plate models and their 3-D counterparts", International Journal of Solids and Structures, Vol. 42, pages 2517-2531, 2005. [PDF]
   


10. David H. Laidlaw, Robert M. Kirby, Cullen D. Jackson, J. Scott Davidson, Timothy S. Miller, Marco da Silva, William H. Warren and Michael Tarr, "Comparing 2D Vector Field Visualization Methods: A User Study", IEEE Transactions on Visualization and Computer Graphics, Vol. 11, Number 1, pages 59-70, 2005. [PDF]
    


11. Robert M. Kirby and George Em Karniadakis, "Selecting the Numerical Flux in Discontinuous Galerkin Methods for Diffusion Problems", Journal of Scientific Computing, Vol. 22/23, pages 385-411, 2005. [PDF]
    


12. Robert M. Kirby and Spencer J. Sherwin, "Stabilisation of spectral/hp element methods through spectral vanishing viscosity: Application to fluid mechanics modelling", Computer Methods in Applied Mechanics and Engineering, Vol. 195, pages 3128-2144, 2006. [PDF]
    


13. Blake Nelson and Robert M. Kirby, "Ray-Tracing Polymorphic Multi-Domain Spectral/hp Elements for Isosurface Rendering",  IEEE Transactions on Visualization and Computer Graphics, Vol. 12, Number 1, pages 114-125, 2006.  [PDF]
    


14. S.J. Sherwin, R.M. Kirby, J. Peiro, R.L. Taylor and O.C. Zienkiewicz, "On 2D Elliptic Discontinuous Galerkin Methods", International Journal for Numerical Methods in Engineering, Vol. 65, Issue 5, pages 752-784, 2006.  [PDF]
    


15. A.R. Sanderson, R.M. Kirby, C.R. Johnson and L. Yang, "Revisiting Reaction-Diffusion Models for Texture Synthesis", Journal of Graphics Tools, Vol. 11, Number 3, pages 47-71, 2006.
    


16. Robert M. Kirby and Spencer J. Sherwin, "Aliasing Errors Due to Quadratic Non-Linearities On Triangular Spectral/hp Element Discretisations", Journal of Engineering Mathematics, Vol. 56, pages 273-288, 2006.  [PDF]


17. Irina Ionescu, James E. Guilkey, Martin Berzins, Robert M. Kirby and Jeffrey A. Weiss, "Simulation of Soft Tissue Failure Using the Material Point Method", Journal of Biomechanical Engineering, Vol. 128, Issue 6, pages 917-924, 2006.  [PDF]


18. Elijah P. Newren, Aaron L. Fogelson, Robert D. Guy and Robert M. Kirby, "Unconditionally Stable Discretizations of the Immersed Boundary Equations", Journal of Computational Physics, Vol. 222, Issue 2, pages 702-719, 2007.  [PDF]


19. Robert M. Kirby, Zohar Yosibash and George Em Karniadakis, "Towards Stable Coupling Methods for High-Order Discretizations of Fluid-Structure Interaction: Algorithms and Observations", Journal of Computational Physics, Vol. 223, Issue 2, pages 489-518, 2007.  [PDF]


20. Sarah E. Geneser, Robert M. Kirby, Dongbin Xiu and Frank B. Sachse, "Stochastic Markovian Modeling of Electrophysiology of Ion Channels: Reconstruction of Standard Deviations in Macroscopic Currents", Journal of Theoretical Biology, Vol. 245, Issue 4, pages 627-637, 2007.  [PDF]


21. C.W. Hamman, R.M. Kirby and M. Berzins,  "Parallelization and Scalability of a Spectral Element Channel Flow Solver for Incompressible Navier-Stokes Equations",  Concurrency and Computation: Practice and Experience, Volume 19, Issue 11, pages 1403-1422, 2007.  [PDF]


22. Miriah Meyer, Blake Nelson, Robert M. Kirby and Ross Whitaker, "Particle Systems for Efficient and Accurate Finite Element Visualization", IEEE Transactions on Visualization and Computer Graphics, Vol. 13, Number 5, pages 1015-1026, 2007.  [PDF]


23. Sean Curtis, Robert M. Kirby, Jennifer K. Ryan and Chi-Wang Shu, "Post-processing for the Discontinuous Galerkin Method Over Non-Uniform Meshes", SIAM Journal on Scientific Computing, Vol. 30, Number 1, pages 272-289, 2007. [PDF]


24. Miriah Meyer, Robert M. Kirby and Ross Whitaker, "Topology, Accuracy, and Quality of Isosurface Meshes Using Dynamic Particles", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Vol. 13, Number 6, pages 1704-1711, 2007. [PDF]


25. Sarah E. Geneser, Robert M. Kirby and Robert S. MacLeod, "Application of Stochastic Finite Element Methods to Study the Sensitivity of ECG Forward Modeling to Organ Conductivity", IEEE Transactions on Biomedical Engineering, Vol. 55, Number 1, pages 31-40, 2007.  [PDF]


26. J.S. Hesthaven and R.M. Kirby, "Filtering in Legendre Spectral Methods", Mathematics of Computation, Vol. 77, Number 263, pages 1425-1452, 2008.  [PDF]


27. Elijah P. Newren, Aaron L. Fogelson, Robert D. Guy and Robert M. Kirby, "A Comparison of Implicit Solvers for the Immersed Boundary Equations", Computer Methods in Applied Mechanics and Engineering, Vol. 197, Issues 25-28, pages 2290-2304, 2008.  [PDF]
    


28. Michael Steffen, Sean Curtis, Robert M. Kirby and Jennifer K. Ryan, "Investigation of Smoothness-Increasing Accuracy-Conserving Filters for Improving Streamline Integration Through Discontinuous Fields", IEEE Transactions on Visualization and Computer Graphics, Vol. 14, Number 3, pages 680-692, 2008.  [PDF]


29. Michael Steffen, Robert M. Kirby and Martin Berzins, "Analysis and Reduction of Quadrature Errors in the Material Point Method (MPM)", International Journal for Numerical Methods in Engineering, Vol. 76, Issue 6, pages 922-948, 2008.  [PDF]


30. C.W. Hamman, J.C. Klewicki and R.M. Kirby, "On the Lamb vector divergence in Navier-Stokes flows", Journal of Fluid Mechanics, Vol. 610, pages 261-284, 2008. [PDF]


31. Tobias Preusser, Hanno Scharr, Kai Krajsek and Robert M. Kirby, "Building Blocks for Computer Vision with Stochastic Partial Differential Equations", International Journal of Computer Vision, Vol. 80, Number 3, pages 375-405, 2008.  [PDF]


32. Robert M. Kirby and Claudio Silva, "The Need For Verifiable Visualization", IEEE Computer Graphics and Applications , Vol. 28, Number 5, pages 78-83, 2008. [PDF]


33. I. Melatti, R. Palmer, G. Sawaya, Y. Yang, R.M. Kirby and G. Gopalakrishnan, "Parallel and distributed model checking in Eddy", International Journal for Software Tools for Technology Transfer, Vol. 11, Number 1, pages 13-25, 2009.  [PDF]
    


34. Allen R. Sanderson, Miriah D. Meyer, Robert M. Kirby and Chris R. Johnson, "A Framework for Exploring Numerical Solutions of Advection-Reaction-Diffusion Equations Using a GPU-Based Approach",  Computing and Visualization in Science, Vol. 12, pages 155-170, 2009.  [PDF]


35. David Walfisch, Jennifer K. Ryan, Robert M. Kirby and Robert Haimes, "One-Sided Smoothness-Increasing Accuracy-Conserving Filtering for Enhanced Streamline Integration through Discontinuous Fields", Journal of Scientific Computing , Vol. 38, Number 2, pages 164-184, 2009. [PDF]


36. Miriah Meyer, Ross Whitaker, Robert M. Kirby, Christian Ledergerber and Hanspeter Pfister, "Particle-based Sampling and Meshing of Surfaces in Multimaterial Volumes", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Vol. 14, Number 6, pages 1539-1546, 2008.  [PDF]


37. M. Steffen, P.C. Wallstedt, J.E. Guilkey, R.M. Kirby and M. Berzins, "Examination and Analysis of Implementation Choices within the Material Point Method", Computer Modeling in Engineering and Science, Vol. 31, Number 2, pages 107-128, 2008.  [PDF]


38. Tobias Martin, Elaine Cohen and Robert M. Kirby, "Volumetric Parameterization and Trivariate B-spline Fitting using Harmonic Functions", Computer Aided Geometric Design, Vol. 26, Issue 6, pages 648-664, 2009.  [PDF]


39. J. Samuel Preston, Tolga Tasdizen, Christi M. Terry, Alfred K. Cheung and Robert M. Kirby, "Using the Stochastic Collocation Method for the Uncertainty Quantification of Drug Concentration Due to Depot Shape Variability", IEEE Transactions on Biomedical Engineering, Vol. 56, Number 3, pages 609-619, 2009. [PDF]


40. T. Etiene, C. Scheidegger, L.G. Nonato, R.M. Kirby and C.T. Silva, "Verifiable Visualization for Isosurface Extraction", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Vol 15., Number 6, pages 1227-1234, 2009.  [PDF]


41. Joseph D. Frazier, Peter K. Jimack and Robert M. Kirby, "On the Use of Adjoint-Based Sensitivity Estimates to Control Local Mesh Refinement", Communications on Computational Physics, Vol. 7, Number 3, pages 631-638, 2010.  [PDF]


42. E. Cohen, T. Martin, R.M. Kirby, T. Lyche and R.F. Riesenfeld, "Analysis-aware Modeling: Understanding Quality Considerations in Modeling for Isogeometric Analysis", Computer Methods in Applied Mechanics and Engineering, Vol. 199, Issues 5-8, pages 334-356, 2010.  [PDF]


43. Michael Steffen, Robert M. Kirby and Martin Berzins, "Decoupling and Balancing of Space and Time Errors in the Material Point Method (MPM)", International Journal for Numerical Methods in Engineering , Vol. 82, pages 1207-1243, 2010.  [PDF]


44. Salman Pervez, Ganesh Gopalakrishnan, Robert M. Kirby, Rajeev Thakur and William Gropp, "Formal methods applied to high performance computing software design: a case study of MPI one-sided communication based locking", Software: Practice and Experience, Vol. 40, Issue 1, pages 23-43, 2010.  [PDF]


45. Dafang Wang, Robert M. Kirby and Chris R. Johnson, "Resolution Strategies for the Finite Element Based Solution of the Electrocardiographic Inverse Problem", IEEE Transactions on Biomedical Engineering, Vol. 57, Issue 2, pages 220-237, 2010. [PDF]


46. Hanieh Mirzaee, Jennifer K. Ryan and Robert M. Kirby, "Quantificiation of Errors Introduced in the Numerical Approximation and Implementation of Smoothness-Increasing Accuracy Conserving (SIAC) Filtering of Discontinuous Galerkin (DG) Fields", Journal of Scientific Computing, Vol. 45, pages 447-470, 2010. [PDF]


47. Guodong Li, Robert Palmer, Michael DeLisi, Ganesh Gopalakrishnan and Robert M. Kirby, "Formal Specification of MPI 2.0: Case Study in Specifying a Practical Concurrent Programming API", Science of Computer Programming, Vol. 76, pages 65-81, 2011. [PDF]


48. Yu Yang, Xiaofang Chen, Ganesh Gopalakrishnan and Robert M. Kirby, "Distributed Dynamic Partial Order Reduction", International Journal on Software Tools for Technology Transfer, Vol. 12, Number 2, pages 113-122, 2010. [PDF]


49. Peter E. J. Vos, Spencer J. Sherwin and Robert M. Kirby, "h-p Efficiently: Implementing Finite and Spectral/hp Element Methods to Achieve Optimal Performance for Low- and High-Order Discretisations", Journal of Computational Physics, Vol. 229, Issue 13, pages 5161-5181, 2010. [PDF]


50. S.E. Geneser, J.D. Hinkle, R.M. Kirby, B. Wang, B. Salter and S. Joshi, "Quantifying Variability in Radiation Dose Due to Respiratory-Induced Tumor Motion", Medical Image Analysis, Vol. 15, Issue 4, pages 640-649, 2011. [PDF]


51. Peter K. Jimack and Robert M. Kirby, "Towards the Development on an h-p-Refinement Strategy Based Upon Error Estimate Sensitivity", Computers and Fluids, Vol. 46, Issue 1, pages 277-281, 2011. [PDF]


52. C.D. Cantwell, S.J. Sherwin, R.M. Kirby and P.H.J. Kelly, "From h to p Efficiently: Strategy Selection for Operator Evaluation on Hexahedral and Tetrahedral Elements", Computers and Fluids, Vol. 43, Issue 1, pages 23-28, 2011. [PDF]


53. Peter E.J. Vos, Sehun Chun, Alessandro Bolis, Claes Eskilsson, Robert M. Kirby and Spencer J. Sherwin, "A Generic Framework for Time-Stepping PDEs: General Linear Methods, Object-Oriented Implementations and Applications to Fluid Problems", International Journal of Computational Fluid Dynamics, Vol. 25, Issue 3, pages 107-125, 2011. [PDF]


54. Dafang Wang, Robert M. Kirby and Chris R. Johnson, "Finite-Element-Based Discretization and Regularization Strategies for 3D Inverse Electrocardiography", IEEE Transactions on Biomedical Engineering, Vol. 58, Issue 6, pages 1827-1838, 2011. [PDF]


55. Samuel A. Isaacson and Robert M. Kirby, "Numerical Solution of Linear Volterra Integral Equations of the Second Kind with Sharp Gradients", Journal of Computational and Applied Mathematics, Vol. 235, Issue 14, pages 4383-4401, 2011. [PDF]


56. C.D. Cantwell, S.J. Sherwin, R.M. Kirby and P.H. Kelly, "From h to p Efficiently: Selecting the Optimal Spectral/hp Discretisation in Three Dimensions", Math. Model. Nat. Phenom., Vol. 6, No. 3, pages 84-96, 2011. [PDF]


57. Tobias Martin, Elaine Cohen and Robert M. Kirby, "Direct Isosurface Visualization of Hex-Based High-Order Geometry and Attribute Representations", IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 5, pages 753-766, 2012. [PDF]


58. Tiago Etiene, L. Gustavo Nonato, Carlos Scheidegger, Julien Tierny, Thomas J. Peters, Valerio Pascucci, Robert M. Kirby and Claudio T. Silva, "Topology Verification for Isosurface Extraction", IEEE Transactions on Visualization and Computer Graphics, Vol. 18, No. 6, pages 952-965, 2012. [PDF]


59. Robert M. Kirby, Bernardo Cockburn and Spencer J. Sherwin, "To CG or to HDG: A Comparative Study", Journal of Scientific Computing, Vol. 51, No. 1, pages 183-212, 2012. [PDF]


60. Ganesh Gopalakrishnan, Robert M. Kirby, Stephen Siegel, Rajeev Thakur, William Gropp, Ewing Lusk, Bronis R. de Supinski, Martin Schultz and Greg Bronevetsky, "Formal Analysis of MPI-Based Parallel Programs: Present and Future", Communications of the ACM, Vol. 54, No. 12, pages 82-91, 2011. [PDF]


61. Z. Fu, W.-K. Jeong, Y. Pan, R. M. Kirby, and R. T. Whitaker, "A fast iterative method for solving the Eikonal equation on triangulated surfaces", SIAM Journal on Scientific Computing, Vol. 33, No. 5, pages 2468-2488, 2011. [PDF]


62. Hanieh Mirzaee, Liang Yue, Jennifer K. Ryan and Robert M. Kirby, "Smoothness-Increasing Accuracy-Conserving (SIAC) Postprocessing for Discontinuous Galerkin Solutions Over Structured Triangular Meshes", SIAM Journal of Numerical Analysis, Vol. 49, No. 5, pages 1899-1920, 2011. [PDF]


63. Hanieh Mirzaee, Jennifer K. Ryan and Robert M. Kirby, "Efficient Implementation of Smoothness-Increasing Accuracy-Conserving (SIAC) Filters for Discontinuous Galerkin Solutions", Journal of Scientific Computing, Vol. 52, No. 1, pages 85-112, 2012. [PDF]


64. Darrell Swenson, Sarah E. Geneser, Jeroen G. Stinstra, Robert M. Kirby and Robert S. MacLeod, "Cardiac Position Sensitivity Study in the Electrocardiographic Forward Problem Using Stochastic Collocation and Boundary Element Methods",Annals of Biomedical Engineering, Vol. 39, No. 12, pages 2900-2910, 2011. [PDF]


65. Blake Nelson, Robert Haimes and Robert M. Kirby, "GPU-Based Interactive Cut-Surface Extraction From High-Order Finite Element Fields", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Vol. 17, No. 12, pages 1803-1811, 2011. [PDF]


66. Inga Altrogge, Tobias Preusser, Tim Kroger, Sabrina Haase, Tobren Patz and Robert M. Kirby, "Sensitivity Analysis for the Optimization of Radiofrequency Ablation in the Presence of Material Parameter Uncertainty",International Journal for Uncertainty Quantification, Vol. 2, Issue 3, pages 295-321, 2012. [PDF]


67. Tobias Martin, Elaine Cohen and Robert M. Kirby, "Mixed-Element Volume Completion for NURBS Surfaces", Computers & Graphics, Vol. 36, Issue 5, pages 548-554, 2012. [PDF]


68. Kristin Potter, Robert M. Kirby, Dongbin Xiu and Chris R. Johnson, "Interactive Visualization of Probability And Cumulative Density Functions", International Journal for Uncertainty Quantification, Vol. 2, Issue 4, pages 397-412, 2012. [PDF]


69. James King, Hanieh Mirzaee, Jennifer K. Ryan and Robert M. Kirby, "Smoothness-Increasing Accuracy-Conserving (SIAC) Filtering for discontinuous Galerkin Solutions: Improved Errors Versus Higher-Order Accuracy", Journal of Scientific Computing, Vol. 53, Issue 1, pages 129-149, 2012. [PDF]


70. Hanne Tiesler, Robert M. Kirby, Dongbin Xiu and Tobias Preusser, "Stochastic Collocation for Optimal Problems with Stochastic PDE Constraints", SIAM Journal of Control and Optimization, Vol. 50, Issue 5, pages 2659-2682, 2012. [PDF]


71. Blake Nelson, Eric Liu, Robert Haimes and Robert M. Kirby, "ElVis: A System for the Accurate and Interactive Visualization of High-Order Finite Element Solutions", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Vol. 18, No. 12, pages 2325-2334, 2012. [PDF]


72. Torben Patz, Tobias Preusser and Robert M. Kirby, "Ambrosio-Tortorelli Segmentation of Stochastic Images: Model Extensions, Theoretical Investigations and Numerical Methods", International Journal of Computer Vision, Vol. 103, Issue 2, pages 190-212, 2013. [PDF]


73. Chao Yang, Dongbin Xiu and Robert M. Kirby, "Visualization of Covariance and Cross-Covariance Fields", International Journal for Uncertainty Quantification, Vol. 3, No. 1, pages 25-38, 2013. [PDF]


74. Hanieh Mirzaee, James King, Jennifer K. Ryan and Robert M. Kirby, "Smoothness-Increasing Accuracy-Conserving (SIAC) Filters for Discontinuous Galerkin Solutions Over Unstructured Triangular Meshes", SIAM Journal on Scientific Computing, Vol. 35, No. 1, pages 212-230, 2013. [PDF]


75. Varun Shankar, Grady B. Wright, Aaron L. Fogelson and Robert M. Kirby, "A Study Of Different Modeling Choices For Simulating Platelets With The Immersed Boundary Method", Applied Numerical Mathematics, Vol. 63, pages 58-77, 2013. [PDF]


76. Robert M. Kirby and Miriah Meyer, "Visualization Collaborations: Reflections on What Works and Why", IEEE Computer Graphics and Applications, Volume 33, Issue 6, pages 82-88, 2013. [PDF]


77. Dafang Wang, Robert M. Kirby, Rob S. MacLeod and Chris R. Johnson, "Inverse electrocardiographic source localization of ischemia: an optimization framework and finite element solution", Journal of Computational Physics, Vol. 250, Issue 1, pages 403-424, 2013. [PDF]


78. Blake Nelson, Robert M. Kirby, Robert Haimes, "GPU-Based Volume Visualization From High-Order Finite Element Fields", IEEE Transactions on Visualization and Computer Graphics, Vol. 20, No. 1, pages 70-83, 2014. [PDF]


79. Tiago Etiene, Daniel Jonsson, Timo Ropinski, Carlos Scheidegger, Joao Comba, L. Gustavo Nonato, Robert M. Kirby, Anders Ynnerman and Claudio T. Silva, "Verifying Volume Rendering Using Discretization Error Analysis", IEEE Transactions on Visualization and Computer Graphics, Vol. 20, No. 1, pages 140-154, 2014. [PDF]


80. Hanieh Mirzaee, Jennifer K. Ryan and Robert M. Kirby, "Smoothness-Increasing Accuracy-Conserving (SIAC) Filtering for Discontinuous Galerkin Solutions: Applications to Structured Tetrahedral Meshes", Journal of Scientific Computing, Vol. 58, No. 3, pages 690-704, 2014. [PDF]


81. Zhisong Fu, Robert M. Kirby and Ross T. Whitaker, "A Fast Iterative Method for Solving the Eikonal Equation on Tetrahedral Domains", SIAM Journal on Scientific Computing, Vol. 35, No. 5, pages C473-C494, 2013. [PDF]


82. Ross T. Whitaker, Mahsa Mirzargar and Robert M. Kirby, "Contour Boxplots: A Method for Characterizing Uncertainty in Feature Sets from Simulation Ensembles", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Vol. 19, Issue 12, pages 2713-2722, 2013. [PDF]


83. Blake Nelson, Robert M. Kirby and Steven Parker, "Optimal Expression Evaluation Through the Use of Expression Templates When Evaluating Dense Linear Algebra Operations", ACM Transactions on Mathematical Software, Vol. 40, Issue 3, pages 21:1-21:21, 2014. [PDF]


84. Zhisong Fu, T. James Lewis, Robert M. Kirby and Ross T. Whitaker, "Architecting the Finite Element Method Pipeline for the GPU", Journal of Computational and Applied Mathematics, Volume 257, pages 195-211, 2014. [PDF]


85. C.D. Cantwell, S. Yakovlev, R.M. Kirby, N.S. Peters and S.J. Sherwin, "High-order continuous spectral/hp element discretisation for reaction-diffusion problems on a surface", Journal of Computational Physics, Vol. 257, Part A, pages 813-829, 2014. [PDF]


86. James King, Sergey Yakovlev, Zhisong Fu, Robert M. Kirby and Spencer J. Sherwin, "Exploiting Batch Processing on Streaming Architectures to Solve 2D Elliptic Finite Element Problems: A Hybridized Discontinuous Galerkin (HDG) Case Study", Journal of Scientific Computing, Volume 60, pages 457-482, 2014. [PDF]


87. Varun Shankar, Grady B. Wright, Aaron L. Fogelson and Robert M. Kirby, "A Radial Basis Function (RBF)-Finite Difference Method for the Simulation of Reaction-Diffusion Equations on Stationary Platelets within the Augmented Forcing Method", International Journal for Numerical Methods in Fluids, Volume 75, Issue 1, pages 1-22, 2014. [PDF]


88. A. Bolis, C.D. Cantwell, R.M. Kirby and S.J. Sherwin, "h to p efficiently: Optimal implementation strategies for explicit time-dependent problems using the spectral/hp element method", International Journal for Numerical Methods in Fluids, Volume 75, Issue 8, pages 591-607, 2014. [PDF]


89. Liam C. Jacobson, Robert M. Kirby and Valeria Molinero, "How Short Is Too Short for the Interactions of a Water Potential? Exploring the Parameter Space of a Coarse-Grained Water Model Using Uncertainty Quantification", Journal of Physical Chemistry B, Vol. 118, pages 8190-8202, 2014. [PDF]


90. Zhisong Fu, Sergey Yakovlev, Robert M. Kirby and Ross T. Whitaker, "Fast Parallel Solver for Levelset Equations on Unstructured Meshes", Concurrency and Computation: Practice and Experience, Vol. 27, pages 1639-1657, 2015. [PDF]


91. Mahsa Mirzargar, Ross T. Whitaker and Robert M. Kirby, "Curve Boxplot: Generalization of Boxplot for Ensembles of Curves", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Vol. 20, Number 12, pages 2654-2663, 2014. [PDF]


92. Varun Shankar, Grady B. Wright, Robert M. Kirby and Aaron L. Fogelson, "A Radial Basis Function (RBF)-Finite Difference (FD) Method for Diffusion and Reaction-Diffusion Equations on Surfaces", Journal of Scientific Computing, Vol. 63, pages 745-768, 2014. [PDF]


93. Jennifer K. Ryan, Xiaozhou Li, Robert M. Kirby and Kees Vuik, "One-Sided Position-Dependent Smoothness-Increasing Accuracy-Conserving (SIAC) Filtering Over Uniform and Non-Uniform Meshes", Journal of Scientific Computing, Volume 64, Issue 3, pages 773-817, 2015. [PDF]


94. C.D. Cantwell, D. Moxey, A. Comerford, A. Bolis, G. Rocco, G. Mengaldo, D. de Grazia, S. Yakovlev, J-E Lombard, D. Ekelschot, B. Jordi, H. Xu, Y. Mohamied, C. Eskilsson, B. Nelson, P. Vos, C. Biotto, R.M. Kirby and S.J. Sherwin, "Nektar++: An open-source spectral/hp element framework", Computer Physics Communications, Volume 192, pages 205-219, 2015. [PDF]


95. Mukund Raj, Mahsa Mirzargar, Robert M. Kirby and Ross T. Whitaker, "Evaluating Alignment of Shapes by Ensemble Visualization", IEEE Computer Graphics and Applications, Volume 36, Issue 3, pages 60-71, 2016. [PDF]


96. Varun Shankar, Grady B. Wright, Robert M. Kirby and Aaron L. Fogelson, "Augmenting the Immersed Boundary Method with Radial Basis Functions (RBFs) for the Modeling of Platelets in Hemodynamic Flows", International Journal for Numerical Methods in Fluids, Volume 79, Issue 10, pages 536-557, 2015. [PDF]


97. Yanyan He, Mahsa Mirzargar and Robert M. Kirby, "Mixed Aleatory and Epistemic Uncertainty Quantification Using Fuzzy Set Theory", International Journal of Approximate Reasoning, Volume 66, pages 1-15, 2015. [PDF]


98. Sergey Yakovlev, David Moxey, Robert M. Kirby and Spencer J. Sherwin, "To CG or to HDG: A Comparative Study in 3D", Journal of Scientific Computing, Volume 67, Issue 1, pages 192-220, 2016. [PDF]


99. Mahsa Mirzargar, Jennifer K. Ryan and Robert M. Kirby, "Smoothness-Increasing Accuracy-Conserving (SIAC) Filtering and Quasi-Interpolation: A Unified View", Journal of Scientific Computing, Volume 5, pages 433-451, 2016. [PDF]


100. X. Li, J.K. Ryan, R.M. Kirby and C. Vuik, "Smoothness-Increasing Accuracy-Conserving (SIAC) Filters for Derivative Approximations of discontinuous Galerkin (DG) Solutions over Nonuniform Meshes and Near Boundaries", Journal of Computational and Applied Mathematics, Volume 294, pages 275-296, 2016. [PDF]


101. Yanyan He, Mahsa Mirzargar, Sophia Hudson, Robert M. Kirby and Ross T. Whitaker, "An Uncertainty Visualization Technique Using Possibility Theory: Possibilistic Marching Cubes", International Journal for Uncertainty Quantification, Volume 5, pages 433-451, 2016. [PDF]


102. Hadi Meidani, Justin B. Hooper, Dmitry Bedrov and Robert M. Kirby, "Calibration and Ranking of Coarse-Grained Models in Molecular Simulations Using Bayesian Formalism", International Journal for Uncertainty Quantification, Volume 2, Issue 2, pages 99-115, 2017. [PDF]


103. Carlo Forestiere, Yanyan He, Ren Wang, Robert M. Kirby and Luca Dal Negro, "Inverse Design of Metal Nanoparticles' Morphology", ACS Photonics, Volume 3, Issue 1, pages 68-78, 2016. [PDF]


104. Mukund Raj, Mahsa Mirzargar, Robert Ricci, Robert M. Kirby and Ross T. Whitaker, "Path Boxplots: A Method for Characterizing Uncertainty in Path Ensembles on a Graph", Journal of Computational and Graphical Statistics, Volume 26, Issue 2, pages 243-252, 2017. [PDF]


105. David Moxey, Chris D. Cantwell, Robert M. Kirby and Spencer J. Sherwin, "Optimizing the Performance of the Spectral/hp Element Method With Collective Linear Algebra Operations", Computer Methods in Applied Mechanics and Engineering, Volume 310, pages 628-645, 2016. [PDF]


106. Chris Gritton, James Guilkey, Justin Hooper, Dmitry Bedrov, Robert M. Kirby and Martin Berzins, "Using the material point method to model chemical/mechanical coupling in the deformation of a silicone anode", Modelling and Simulation in Materials Science and Engineering, Volume 25, Number 4, 2017. [PDF]


107. Julia Docampo-Sanchez, Jennifer K. Ryan, Mahsa Mirzargar and Robert M. Kirby, "Multi-dimensional filtering: Reducing the dimension through rotation", SIAM Journal on Scientific Computing, Volume 39, Number 5, pages A2179-2200, 2017. [PDF]


108. Ashok Jallepalli, Julia Docampo-Sanchez, Jennifer K. Ryan, Robert Haimes and Robert M. Kirby, "On the Treatment of Field Quantities and Elemental Continuity in FEM Solutions", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Volume 24, Issue 1, pages 903-912, 2017. [PDF]


109. Mahsa Mirzargar, Ashok Jallepalli, Jennifer K. Ryan and Robert M. Kirby, "Hexagonal Smoothness-Increasing Accuracy-Conserving Filtering", Journal of Scientific Computing, Volume 73, Issues 2-3, pages 1072-1093, 2017. [PDF]


110. Marc Rautenhaus, Michael Böttinger, Stephan Siemen, Robert Hoffman, Robert M. Kirby, Mahsa Mirzargar, Niklas Röber and Rüdiger Westermann, "Visualization in Meteorology -- A Survey of Techniques and Tools for Data Analysis Tasks", IEEE Transactions on Visualization and Computer Graphics, Volume 24, Issue 12, pages 3268-3296, 2018. [PDF]


111. Y. He, M. Razi, C. Forestiere, L. Dal Negro and R.M. Kirby, "Uncertainty Quantification Guided Robust Design for Nanoparticles' Morphology", Computer Methods in Applied Mechanics and Engineering, Volume 336, pages 578-593, 2018. [PDF]


112. Vidhi Zala, Varun Shankar, Shankar P. Sastry and Robert M. Kirby, "Curvilinear Mesh Adaptation using Radial Basis Function Interpolation and Smoothing", Journal of Scientific Computing, Volume 77, Issue 1, pages 397-418, 2018. [PDF]


113. Vahid Keshavarzzadeh, Robert M. Kirby and Akil Narayan, "Numerical Integration in Multiple Dimensions With Designed Quadrature", SIAM Journal on Scientific Computing, Vol. 40, Number 4, pages A2033-A2061, 2018. [PDF]


114. M. Razi, A. Narayan, R.M. Kirby and D. Bedrov, "Fast Predictive Models Based on Multi-fidelity Sampling of Properties in Molecular Dynamics Simulations", Computational Material Science, Vol. 152, pages 125-133, 2018. [PDF]


115. Anindya Bharuri, Yanyan He, Michael D. Sheilds, Lori Graham-Brady and Robert M. Kirby, "Stochastic collocation approach with adaptive mesh refinement for parametric uncertainty analysis", Journal of Computational Physics, Volume 371, pages 732-750, 2018. [PDF]


116. Timbwaoga Ouermi, Robert M. Kirby and Martin Berzins, "Performance Optimization Strategies for WRF Physics Schemes Used in Weather Modeling", International Journal of Networking and Computing, Volume 8, Number 2, pages 301-327, 2018. [PDF]


117. Varun Shankar, Robert M. Kirby and Aaron Fogelson, "Robust Node Generation For Meshfree Discretizations on Irregular Domains and Surfaces", SIAM Journal on Scientific Computing, Volume 40, Issue 4, pages A2584-A2608, 2018. [PDF]


118. Mani Razi, Ren Wang, Yanyan He, Robert M. Kirby and Luca Dal Negro, "Optimization of Large-Scale Vogel Spiral Arrays of Plasmonic Nanoparticles", Plasmonics, Volume 14, Issue 1, pages 253-261, 2019. [PDF]


119. Varun Shankar, Akil Narayan and Robert M. Kirby, "RBF-LOI: Augmenting Radial Basis Functions (RBFs) with Least Orthogonal Interpolation (LOI) for Solving PDEs on Surfaces", Journal of Computational Physics, Volume 373, pages 722-735, 2018. [PDF]


120. David Moxey, Shankar P. Sastry and Robert M. Kirby, "Interpolation error bounds for curvilinear finite elements and their implications on adaptive mesh refinement", Journal of Scientific Computing, Volume 78, Issue 2, pages 1045-1062, 2019. [PDF]


121. Ashok Jallepalli, Robert Haimes and Robert M. Kirby, "Adaptive Characteristic Length for L-SIAC Filtering of FEM Data", Journal of Scientific Computing, Volume 79, pages 542-563, 2019. [PDF]


122. Mani Razi, Robert M. Kirby and Akil Narayan, "Fast Predictive Multi-fidelity Prediction with Models of Quantized Fidelity Levels", Journal of Computational Physics, Volume 376, pages 992-1008, 2019. [PDF]


123. Daniel J. Perry, Robert M. Kirby, Akil Narayan and Ross Whitaker, "Allocation Strategies for High Fidelity Models in the Multifidelity Regime", SIAM Journal on Uncertainty Quantification, Volume 7, Number 1, pages 203-231, 2019. [PDF]


124. Xiaozhou Li, Jennifer K. Ryan, Robert M. Kirby, Kees Vuik, "Smoothness-Increasing Accuracy-Conserving (SIAC) Filtering for Discontinuous Galerkin Solutions over Nonuniform Meshes: Superconvergence and Optimal Accuracy", Journal of Scientific Computing, Volume 81, pages 1150-1180, 2019. [PDF]


125. Vahid Keshavarzzadeh, Robert M. Kirby and Akil Narayan, "Parametric Topology Optimization with Multi-Resolution Finite Element Models", International Journal on Numerical Methods in Engineering, Volume 119, Issue 7, pages 567-589, 2019. [PDF]


126. Vahid Keshavarzzadeh, Robert M. Kirby and Akil Narayan, "Convergence Acceleration for Time-Dependent Parametric Multifidelity Models", SIAM Journal on Numerical Analysis, Volume 57, Number 3, pages 1344-1368, 2019. [PDF]


127. Ashok Jallepalli and Robert M. Kirby, "Efficient Algorithms for the Line-SIAC Filter", Journal of Scientific Computing, Volume 80, pages 743-761, 2019. [PDF]


128. Martin Vymazal, David Moxey, Chris D. Cantwell, Spencer J. Sherwin and Robert M. Kirby, "On weak Direchlet boundary conditions for elliptic problems in the continuous Galerkin method", Journal of Computational Physics, Volume 394, pages 732-744, 2019. [PDF]


129. Ashok Jallepalli, Joshua A. Levine and Robert M. Kirby, "The effect of data transformation methodologies on the topological analysis of high-order FEM solutions", IEEE Transactions on Visualization and Computer Graphics (IEEE Visualization Issue), Volume 26, Issue 1, pages 162-172, 2020. [PDF]


130. Vahid Keshavarzzadeh, Akil Narayan and Robert M. Kirby, "Generation of Nested Quadrature Rules for Generic Weight Functions via Numerical Optimization: Application to Sparse Grids", Journal of Computational Physics, Volume 400, 108991, 2020. [PDF]


131. Yanyan He, John Chilleri, Stephen O'Leary, Michael Shur and Robert M. Kirby, "Sensitivity Analysis for an Electron Transport System: Application to the Case of Wurtzite Gallium Nitride", Journal of Computational Electronics, Volume 19, pages 103-110, 2020. [PDF]


132. David Moxey, Chris D. Cantwell, Yan Bao, Andrea Cassinelli, Giacomo Castiglioni, Sehun Chun, Emilia Juda, Ehsan Kazemi, Kilian Lackhove, Julian Marcon, Giancarco Mengaldo, Douglas Serson, Michael Turner, Hui Xu, Jaoquim Peiro, Robert M. Kirby and Spencer J. Sherwin, "Nektar++: enhancing the capability and application of high-fidelity spectral/hp element methods", Computer Physics Communications, Volume 249, 107110, 2020. [PDF]


133. Wei Xing, Shireen Y. Elhabian, Vahid Keshavarzzadeh and Robert M. Kirby, "Shared-GP: Learning Interpretable Shared 'Hidden' Structure Across Data Spaces for Design Space Analysis and Exploration", Journal of Mechanical Design, Volume 142, Issue 8, 081707, 2020. [PDF]


134. M. Razi, A. Narayan, R.M. Kirby and D. Bedrov, "Force-Field Coefficient Optimization of Coarse-Grained Molecular Dynamics Models with a Small Computational Budget", Computational Materials Science, Volume 176, 109518, 2020. [PDF]


135. Vahid Keshavarzzadeh, Robert M. Kirby and Akil Narayan, "Stress-Based Topology Optimization under Uncertainty via Simulation-Based Gaussian Process", Computer Methods in Applied Mechanics and Engineering, Volume 365, 112992, 2020. [PDF]


136. Harsh Bhatia, Robert M. Kirby, Valerio Pascucci and Peer-Timo Bremer, "Vector Field Decompositions using Multiscale Poisson Kernel", IEEE Transactions on Visualization and Computer Graphics, doi: 10.1109/TVCG.2020.2984413, 2020. [PDF]


137. David Moxey, Roman Amici and Robert M. Kirby, "Efficient Matrix-Free High-Order Finite Element Evaluation For Simplicial Elements", SIAM Journal on Scientific Computing, Volume 42, Issue 3, pages C97-C123, 2020. [PDF]


138. W. Xing, M. Razi, R.M. Kirby, K. Sun and A.A. Shah, "Greedy Nonlinear Autoregression For Multifidelity Computer Models at Different Scales", Energy and AI, Volume 1, 100012, 2020. [PDF]


139. Vidhi Zala, Robert M. Kirby and Akil Narayan, "Structure-preserving function approximation via convex optimization", SIAM Journal on Scientific Computing, Volume 42, Issue 5, pages A3006-A3029, 2020. [PDF]


140. Mani Razi, Robert M. Kirby and Akil Narayan, "Kernel Optimization For Low-Rank Multi-Fidelity Algorithms", International Journal for Uncertainty Quantification, Volume 11, Issue 1, pages 31-54, 2021. [PDF]
.

141. Vahid Keshavarzzadeh, Mitra Alirezaei, Tolga Tasdizen and Robert M. Kirby, "Image-Based Multiresolution Topology Optimization Using Deep Disjunctive Normal Shape Model", Computer-Aided Design, Volume 130, 102947, 2021. [PDF]


142. Max Carlson, Xiaoning Zheng, Hari Sundar, George Em Karniadakis and Robert M. Kirby, "An open-source parallel code for computing the spectral fractional Laplacian on 3D complex geometry domains", Computer Physics Communications, Volume 261, 107695, 2021. [PDF]


143. Wei Xing, Robert M. Kirby and Shandian Zhe, "Deep Coregionalization for the Emulation of Simulation-Based Spatial-Temporal Fields", Journal of Computational Physics, Volume 428, 109984, 2021. [PDF]


144. John Chilleri, Yanyan He, Dmitry Bedrov and Robert M. Kirby, "Optimal allocation of computational resources based on Gaussian process: Application to molecular dynamics simulations", Computational Materials Science, Volume 188, 110178, 2021. [PDF]


145. Vahid Keshavarzzadeh, Robert M. Kirby and Akil Narayan, "Multilevel Designed Quadrature For Partial Differential Equations With Random Inputs", SIAM Journal on Scientific Computing, Volume 43, Number 2, pages A1412-A1440, 2021. [PDF]


146. W.W. Xing, A.A. Shah, P. Wang, S. Zhe and R.M. Kirby, "Residual Gaussian process: A tractable nonparametric Bayesian emulator for multi-fidelity simulations", Applied Mathematical Modelling, Vol. 97, pages 36-56, 2021. [PDF]


147. Vidhi Zala, Robert M. Kirby and Akil Narayan, "Structure-preserving Nonlinear Filtering for Continuous and Discontinuous Galerkin Spectral/hp Element Methods", SIAM Journal on Scientific Computing, Volume 43, Number 6, pages A3713-3732, 2021. [PDF]


148. Nghia Truong, Cem Yuskel, Chakrit Watcharopas, Joshua A. Levine and Robert M. Kirby, "Particle Merging-and-Splitting", IEEE Transactions on Visualization and Computer Graphics, Volume 28, pages 4546-4557, 2022. [PDF]


149. Vahid Keshavarzzadeh, Robert M. Kirby and Akil Narayan, "Robust Topology Optimization with Low Rank Approximation Using Artificial Neural Networks", Computational Mechanics, Volume 68, pages 1297-1323, 2021. [PDF]


150. Karl Garbrecht, Miguel Aguilo, Allen Sanderson, Anthony Rollett, Robert M. Kirby and Jacob Hochhalter, "Interpretable Machine Learning for Texture-Dependent Constitutive Models with Automatic Code Generation for Topological Optimization", Integrating Materials and Manufacturing Innovation (Special Issue) ,Volume 10, pages 373-392, 2021. [PDF]


151. Yiming Xu, Vahid Keshavarzzadeh, Robert M. Kirby and Akil Narayan, "A Bandit-Learning Approach To Multifidelity Approximation", SIAM Journal on Scientific Computing, Volume 44, Number 1, pages A150-175, 2022. [PDF]


152. M. Keith Ballard, Roman Amici, Varun Shankar, Lauren A. Ferguson, Michael Braginsky and Robert M. Kirby, "Towards an Extrinsic, CG-XFEM Approach Based on Hierarchical Enrichments for Modeling Progressive Fracture", Computer Methods in Applied Mechanics and Engineering, Volume 388, pages 114221, 2022. [PDF]


153. Michael Penwarden, Shandian Zhe, Akil Narayan and Robert M. Kirby, "Multifidelity Modeling for Physics-Informed Neural Networks (PINNs)", Journal of Computational Physics, Volume 451, pages 110844, 2022. [PDF]


154. Edward Laughton, Vidhi Zala, Akil Narayan, Robert M. Kirby and David Moxey, "Fast Barycentric-Based Evaluation Over Spectral/hp Elements", Journal of Scientific Computing, Volume 90, pages 78-102, 2022. [PDF]


155. Timbwaoga Ouermi, Robert M. Kirby and Martin Berzins, "ENO-Based High-Order Data-Bounded and Constrained Positivity-Preserving Interpolation", Numerical Algorithms, Volume 92, pages 1517-1551, 2023. [PDF]


156. Vahid Keshavarzzadeh, Robert M. Kirby and Akil Narayan, "Variational Inference for Nonlinear Inverse Problems via Neural Net Kernels: Comparison to Bayesian Neural Networks, Application to Topology Optimization", Computer Methods in Applied Mechanics and Engineering, Volume 400, 115495, 2022. [PDF]


157. Michael Penwarden, Shandian Zhe, Akil Narayan and Robert M. Kirby, "A Metalearning Approach for Physics-Informed Neural Networks (PINNs) Tasks: Testbed Applications with Parameterized PDEs", Journal of Computational Physics, Volume 477, pages 111912, 2023. [PDF]


158. Shikai Fang, Shandian Zhe, Hui-Ming Lin, Arun A. Azad, Heidi Fettke, Edmond M Kwan, Lisa Horvath, Blossom Mak, Peter Meikle, Tiantian Zheng, Pan Du, Shidong Jia, Robert M. Kirby and Manish Kohli, "Multi-Omic Integration of Blood-Based Tumor Associated Genomic And Lipidomic Profiles Using Machine Learning Models in Metastatic Prostate Cancer", JCO Clinical Cancer Informatics, Volume 7, Number 7, pages 1-11, 2023. [PDF]


159. Vidhi Zala, Akil Narayan and Robert M. Kirby, "Convex Optimization-Based Structure-Preserving Filter for Multidimensional Finite Element Simulations", Journal of Computational Physics, Volume 492, pages 112364, 2023. [PDF]


160. M. Penwarden, A.D. Jagtap, S. Zhe, G.E. Karnidakis and R.M. Kirby, "A Unified Scalable Framework For Causal Sweeping Strategies For Physics-Informed Neural Networks (PINNs) and Their Temporal Decompositions", Journal of Computational Physics, Volume 493, pages 112464, 2023. [PDF]


161. Ben Charoenwong, Robert M. Kirby and Jonathan Reiter, "Computer Science Abstractions To Help Reason About Decentralized Stablecoin Design", IEEE Access, Volume 11, pages 103201-103213, 2023. [PDF]


162. Timbwoga A.J. Ouermi, Robert M. Kirby and Martin Berzins, "HiPPIS: A High-Order Positivity-Preserving Mapping Software for Structured Meshes", ACM Transactions on Mathematical Software, Volume 50, Number 1, pages 8:1-8:31, 2024. [PDF]


163. Hongsup Oh, Roman Amici, Geoffrey Bomarito, Shandian Zhe, Robert M. Kirby and Jacob Hochhalter, "Inherently Interpretable Machine Learning Solutions to Differential Equations", Engineering with Computers, https://doi.org/10.1007/s00366-023-01915-7, 2023. [PDF]


164. Khemraj Shukla, Vivek Oommen, Ahmad Peyvan, Michael Penwarden, Nicholas Plewacki, Luis Bravo, Anindya Ghoshal, Robert M. Kirby and George Em Karniadakis, "Deep neural operators as accurate surrogates for shape optimization", Engineering Application of Artificial Intelligence, Volume 129, pages 107615, 2023. [PDF]


165. Ashok Jallepalli, Marshall Galbraith, Robert Haimes and Robert M. Kirby, "Non-uniform Knot (NUK) SIAC Post-processing of Flow Fields Produced Through Unstructured Grid Adaptation and Optimization", Journal of Computational Physics, Volume 514, pages 113238, 2024. [PDF]


166. Michael Penwarden, Houman Owhadi and Robert M. Kirby, "Kolmogorov n-Widths for Multitask Physics-Informed Machine Learning (PIML) Methods: Towards Robust Metrics", Neural Networks, Volume 180, pages 106703, 2024. [PDF]


167. Jonas Merrell, John Emery, Robert M. Kirby and Jacob Hochhalter, "Stress intensity factor models using mechanics-guided decomposition and symbolic regression", Engineering Fracture Mechanics, Volume 310, pages 110432, 2024. [PDF]

 
  Refereed Conference and Workshop Publications:

1. R.M. Kirby, H. Marmanis and D.H. Laidlaw, "Visualizing Multivalued Data from 2D Incompressible Flows Using Concepts from Painting",  Proceedings of IEEE Visualization 1999, San Francisco, CA, pages 333-340 October 1999. 


2. G-S Karamanos, C. Evangelinos, R.C. Boes, R.M. Kirby and G.E. Karniadakis, "Direct Numerical Simulation of Turbulence with a PC/Linux Cluster: Fact or Fiction?", Proceedings of SuperComputing 1999, Portland, OR, November 1999. 


3. A. Forsberg, R.M. Kirby, D.H. Laidlaw, G.E. Karniadakis, A. van Dam, and J. Elion, "Immersive Virtual Reality for Visualizing Flow Through an Artery", Proceedings of IEEE Visualization 2000, Salt Lake City, UT, pages 457-460, October 2000.


4. D.H. Laidlaw, R.M. Kirby, J.S. Davidson, T.S. Miller, M. da Silva, W.H. Warren, and M. Tarr, "Quantitative Comparative Evaluation of 2D Vector Field Visualization Methods", Proceedings of IEEE Visualization 2001, San Diego, CA, pages 143-150, October 2001.


5. Allen Sanderson, Chris R. Johnson, and Robert M. Kirby, "Display of Vector Fields Using a Reaction-Diffusion Model", Proceedings of IEEE Visualization 2004, Austin, TX, pages 115-122, October 2004.


6. I. Ionescu, J. Guilkey, M. Berzins, R.M. Kirby and J. Weiss. "Computational Simulation of Penetrating Trauma in Biological Soft Tissues Using the Material Point Method". Proceedings of Medicine Meets Virtual Reality 13 (MMVR 2005), Long Beach, California, USA, pages 213-218, January 26-29, 2005. 


7. M. Berzins, R.M. Kirby, and C.R. Johnson, "Integrating Teaching and Research in HPC: Experiences and Opportunities".  Lecture Notes in Computer Science, Volume 3515.  Proceedings of Computational Science - ICCS 2005, 5th International Conference, Atlanta, GA, USA, May 22-25,  2005.


8. Robert Palmer, Steve Barrus, Yu Yang, Ganesh Gopalakrishnan, and Robert M. Kirby, "Gauss: A Framework for Verifying Scientific Computing Software", Electronic Notes on Theoretical Computer Science (ENTCS), Vol. 144, No. 3, pages 95-106, February 2006.


9. I. Melatti, R. Palmer, G. Sawaya, Y. Yang, R.M. Kirby and G. Gopalakrishnan, "Parallel and distributed model checking in Eddy".  Lecture Notes in Computer Science. Volume 3925.  Proceedings of Model Checking Software: 13th International SPIN Workshop, Vienna, Austria, March 30 - April 1, 2006. 


10. R.M. Kirby, C.R. Johnson and M. Berzins, "Involving Undergraduates in Computational Science and Engineering Research: Successes and Challenges".  Lecture Notes in Computer Science, Volume 3992.  Proceedings of Computational Science - ICCS 2006: 6th International Conference, Reading, UK, May 28-31, 2006.


11. Salman Pervez, Ganesh Gopalakrishnan, Robert M. Kirby, Rajeev Thakur and William Gropp, "Formal Verification of Programs That Use MPI One-Sided Communications".  Proceedings of EuroPVM-MPI 2006, Bonn, Germany, September 17-20, 2006.


12. Yu Yang, Xiaofang Chen, Ganesh Gopalakrishnan and Robert M. Kirby, "Distributed Dynamic Partial Order Reduction Based Verification of
    Threaded Software", Proceedings of Model Checking Software: 14th International SPIN Workshop, Berlin, Germany, July 1-3, 2007.
    


13. Robert Palmer, Michael Delisi, Ganesh Gopalakrishnan and Robert M. Kirby, "An Approach to Formalization and Analysis of Message Passing Libraries''.  Proceedings of the 12th International Workshop on Formal Methods for Industrial Critical Systems (FMICS), Berlin, Germany, July 1-2, 2007.


14. Robert Palmer, Ganesh Gopalakrishnan and Robert M. Kirby, "Semantics Driven Dynamic Partial-Order Reduction of MPI-based Parallel Programs".  Proceedings of Parallel and Distributed Systems: Testing and Debugging (PADTAD), London, England, July 9, 2007.


15. Salman Pervez, Ganesh Gopalakrishnan, Robert M. Kirby, Robert Palmer, Rajeev Thakur and William Gropp, "Practical Model Checking Method for Verifying Correctness of MPI Programs", Proceedings of EuroPVM-MPI 2007, Paris, France, September 30 - October 3, 2007.


16. Tim Kroger, Inga Altrogge, Olaf Konrad, Robert M. Kirby and Tobias Preusser, "Estimation of Probability Density Functions for Parameter Sensitivity Analyses", Proceedings of Simulation and Visualization (SimVis) 2008, Magdeburg, Germany, February 28-29, 2008.


17. Tobias Martin, Elaine Cohen and Robert M. Kirby, "Volumetric Parameterization and Trivariate B-spline Fitting using Harmonic Functions",  Proceedings of ACM Solid and Physical Modeling, Stony Brook, NY, June 2-4, 2008.


18. Sarvani Vakkalanka, Ganesh Gopalakrishnan and Robert Kirby, "Dynamic Verification of MPI programs with Reductions in Presence of Split Operations and Relaxed Orderings", 20th International Conference on Computer Aided Verification (CAV 2008), Princeton, NJ, July 7-14, 2008.


19. Sarvani Vakkalanka, Michael DeLisi, Ganesh Gopalakrishnan and Robert M. Kirby, "Scheduling Considerations for building Dynamic Verification Tools for MPI", Proceedings of Parallel and Distributed Systems: Testing and Debugging (PADTAD), Seattle, WA, July 20-21, 2008.


20. Yu Yang, Xiaofang Chen, Ganesh Gopalakrishnan and Robert M. Kirby, "Efficient Stateful Dynamic Partial Order Reduction", Proceedings of Model Checking Software: 15th International SPIN Workshop, Los Angeles, CA, August 10-12, 2008.


21. Sarvani Vakkalanka, Michael DeLisi, Ganesh Gopalakrishnan, Robert M. Kirby, Rajeev Thakur and William Gropp, "Implementing Efficient Dynamic Formal Verification Methods for MPI Programs", Proceedings of EuroPVM-MPI 2008, Dublin, Ireland, September 7-10, 2008.


22. Subodh Sharma, Sarvani Vakkalanka, Ganesh Gopalakrishnan, Robert M. Kirby, Rajeev Thakur and William Gropp, "A Formal Approach to Detect Functionally Irrelevant Barriers in MPI Programs", Proceedings of EuroPVM-MPI 2008, Dublin, Ireland, September 7-10, 2008.


23. R. Whitaker, R.M. Kirby, J. Sinstra and M. Meyer, "Multimaterial Meshing of MRI Head Data for Bioelectric Field Simulation", Proceedings of the 17th International Meshing Roundtable, 2008.


24. Anh Vo, Sarvani Vakkalanka, Michael Delisi, Ganesh Gopalakrishnan, Robert M. Kirby and Rajeev Thakur, "Formal Verification of Practical MPI Programs", Proceedings of 14th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP), Raleigh, NC, February 14-18, 2009.


25. S.E. Geneser, R.M. Kirby, B. Wang, B. Salter and S. Joshi, "Incorporating Patient Breathing Variability into a Stochastic Model of Dose Deposition for Stereotactic Body Radiation Therapy", Proceedings of Information Processing in Medical Imaging 2009, Williamsburg, VA, Lecture Notes in Computer Science (LNCS) 5636, Pages 688-700, July 5-10, 2009.


26. Anh Vo, Sarvani Vakkalanka, Jason Williams, Ganesh Gopalakrishnan, Robert M. Kirby and Rajeev Thakur, "Sound and Efficient Dynamic Verification of MPI Programs with Probe Non-Determinism", Proceedings of EuroPVM-MPI 2009, Espoo, Finland, September 7-10, 2009.


27. Sriram Aananthakrishnan, Michael DeLisi, Sarvani Vakkalanka, Anh Vo, Ganesh Gopalakrishnan, Robert M. Kirby and Rajeev Thakur, "How Formal Dynamic Verification Tools Facilitate Novel Currency Visualizations", Proceedings of EuroPVM-MPI 2009, Espoo, Finland, September 7-10, 2009.


28. Sarvani Vakkalanka, Anh Vo, Ganesh Gopalakrishnan and Robert M. Kirby, "Reduced Execution Semantics of MPI: From Theory to Practice", Proceedings of the 16th International Symosium on Formal Methods 2009 (FM2009), Eindhoven, the Netherlands, November 2-6, 2009.


29. Sarvani Vakkalanka, Anh Vo, Ganesh Gopalakrishnan and Robert M. Kirby, "Precise Dynamic Analysis for Slack Elasticity: Adding Buffering Without Adding Bugs", Proceedings of EuroMPI 2010, Stuttgart, Germany, September 12-15, 2010.


30. Anh Vo, Ganesh Gopalakrishnan, Robert M. Kirby, Bronis R. de Supinski, Martin Schulz and Greg Bronevetsky, "Large Scale Verification of MPI Programs Using Lamport Clocks with Lazy Update", Proceedings of The Twentieth International Conference on Parallel Architectures and Compilation Techniques (PACT). Galveston, TX, October 10-14, 2011.


31. Tiago Etiene, Robert M. Kirby and Claudio Silva, "A Study of Discretization Errors in Volume Rendering Integral Approximations", EuroRVVV Workshop (held in conjunction with EuroVis), June 17-18, 2013.


32. James King and Robert M. Kirby, "A Scalable, Efficient Scheme for the Evaluation of Stencil Computations over Unstructured Meshes", IEEE SuperComputing 2013, Denver, CO, November 17-22, 2013. [PDF]


33. Shankar Sastry and Robert M. Kirby, "On Interpolation Errors over Quadratic Nodal Triangular Finite Elements", 22nd International Meshing Roundtable, Orlando, FL, October 13-16, 2013. [PDF]


34. H. Bhatia, V. Pascucci, R.M. Kirby and P.-T. Bremer, "Extracting Features from Time-Dependent Vector Fields Using Internal Reference Frames", Eurographics Conference on Visualization (EuroVis), Swansea, Wales, UK, June 9-13, 2014. [PDF]


35. L. Liu, M. Mirzangar, R.M. Kirby, R. Whitaker and D.H. House, "Visualizing Time-Specific Hurricane Predictions, with Uncertainty, from Storm Path Ensembles", Eurographics Conference on Visualization (EuroVis), Cagliari, Sardinia, Italy, May 25-29, 2015. [PDF]


36. Yanyan He, Mahsa Mirzargar and Robert M. Kirby, "Application of Uncertainty Modeling Frameworks to Uncertain Isosurface Extraction", The Fourth International Symposium on Integrated Uncertainty in Knowledge Modelling and Decision Making (IUKM 2015), October 15-17, 2015. [PDF]


37. Shankar P. Sastry, Vidhi Zala and Robert M. Kirby, "Thin-Plate-Spline Curvilinear Meshing on a Calculus-of-Variations Framework", 24th International Meshing Roundtable, Austin, TX, October 12-14, 2015. [PDF]


38. T. James Lewis, Shankar P. Sastry, Robert M. Kirby and Ross T. Whitaker, "A GPU-Based MIS Aggregation Strategy: Algorithms, Comparisons and Applications Within AMG", IEEE International Conference on High-Performance Computing (HiPC), Bengaluru, Bangalore, December 16-19, 2015. [PDF]


39. C.E. Gritton, M. Berzins and R.M. Kirby, "Improving Accuracy in Particle Methods Using Null Spaces and Filters". In: E. Onate, M. Bischoff, D.R.J. Owen, P. Wriggers and T. Zohdi (editors). Proceedings of the IV International Conference on Particle-Based Methods — Fundamentals and Applications (CIMNE), Barcelona, Spain, pages 202 - 213, 2015. [PDF]


40. James King, Thomas Gilray, Robert M. Kirby and Matthew Might, "Dynamic Sparse-Matrix Allocation on the GPU", International Supercomputing Conference (ISC), Frankfurt, Germany, June 19-23, 2016. [PDF]


41. D. Moxey, C.D. Cantwell, G. Mengaldo, D. Serson, D. Ekelschot, S.J. Sherwin and R.M. Kirby, "Towards p-adaptive spectral/hp element methods for modelling industrial flows", International Conference on Spectral and High-Order Methods (ICOSAHOM) 2016, Rio de Janeiro, Brazil, June 2016. [PDF]


42. T. Ouermi, A. Knoll, R.M. Kirby and M. Berzins, "OpenMP 4 Fortran Modernization of WSM6 for KNL", Practice & Experience in Advanced Research Computing 2017 (PEARC17), New Orleans, LA, July 2017. [PDF]


43. Timbwaoga Ouermi, Aaron Knoll, Robert M. Kirby and Martin Berzins, "Optimization Strategies for WSM6 on Intel Microarchitectures", Fifth International Symposium on Computing and Networking 2017 (CANDAR'17) 2017, Aomori, Japan, November 19-22, 2017. [PDF]


44. Thomas Torsney-Weir, Michael Sedlmair, Robert M. Kirby and Torsten Moller, "Hypersliceplorer: Interactive visualization of shapes in multiple dimensions", Eurographics Conference on Visualization (EuroVis), Brno Czech Republic, June 4-8, 2018. [PDF]


45. Majid Rasouli, Vidhi Zala, Robert M. Kirby and Hari Sundar, "Improving Performance and Scalability of Algebraic Multigrid through a Specialized MATVEC", 2018 IEEE High Performance Extreme Computing Conference (HPEC'18), Waltham, MA, USA, September 25-28, 2018. [PDF]


46. Shandian Zhe, Wei Xing and Robert M. Kirby, "Scalable High-Order Gaussian Process Regression", The 22nd International Conference on Artificial Intelligence and Statistics (AISTATS 2019), Naha, Okinawa, Japan, April 16-18, 2019. [PDF]


47. Jian Wang, Wei Xing, Robert M. Kirby and Miaomiao Zhang, "Data-driven Model Order Reduction For Diffeomorphic Image Registration", The 26th International Conference on Image Processing in Medical Imaging (IPMI 2019), Hong Kong, China, June 2-7, 2019. [PDF]


48. Majid Rasouli, Vidhi Zala, Robert M. Kirby and Hari Sundar, "Scalable Lazy-Update Multigrid Preconditioners", 2019 IEEE High Performance Extreme Computing Conference (HPEC'19), Waltham, MA, USA, September 24-26, 2019. [PDF]


49. Wei Xing, Shandian Zhe, Shireen Elhabian, Ross T. Whitaker and Robert M. Kirby, "Infinite ShapeOdds: Nonparametric Bayesian Models for Shape Representations", The Thirty-Fourth AAAI Conference on Artificial Intelligence, New York, NY, USA, February 7-12, 2020. [PDF]


50. Max Carlson, Robert M. Kirby and Hari Sundar, "A Scalable Framework from Solving Fractional Diffusion Equations", International Conference on Supercomputing (ICS) 2020, Barcelona, Spain, June 29 - July 2, 2020. [PDF]


51. Shibo Li, Wei Xing, Robert M. Kirby and Shandian Zhe, "Scalable Gaussian Process Regression Networks", International Joint Conference on Artificial Intelligence - Pacific Rim International Conference on Artificial Intelligence (IJCAI-PRICAI) 2020, Yokohama, Japan, July 11-17, 2020. [PDF]


52. Shibo Li, Wei Xing, Robert M. Kirby and Shandian Zhe, "Multi-Fidelity Bayesian Optimization via Deep Neural Networks", Thirty-fourth Conference on Neural Information Processing Systems (NeurIPS) 2020, Virtual-only Conference, December 6-12, 2020. [PDF]


53. Majid Rasouli, Robert M. Kirby and Hari Sundar, "A Compressed, Divide and Conquer Algorithm for Scalable Distributed Matrix-Matrix Multiply", International Conference on High Performance Computing in Asia-Pacific Region, Jeju, South Korea, January 20-22, 2021. [PDF]


54. Zheng Wang, Wei Xing, Robert M. Kirby and Shandian Zhe, "Multi-Fidelity High-Order Gaussian Processes for Physical Simulation", The 24th International Conference on Artificial Intelligence and Statistics (AISTATS 2021), Virtual-only Conference, April 13-15, 2021. [PDF]


55. Shikai Fang, Robert M. Kirby and Shandian Zhe, "Bayesian Streaming Sparse Tucker Decomposition", The 37th Conference on Uncertainty in Artificial Intelligence (UAI2021), Virtual-only Conference, July 27-30, 2021. [PDF]


56. Harsh Bhatia, Steve N. Petruzza, Rushil Anirudh, Attila G. Gyulassy, Robert M. Kirby, Valerio Pascucci and Peer-Timo Bremer, "Data-Driven Estimation of Temporal-Sampling Errors in Unsteady Flows", The 16th International Symposium on Visual Computing (ISVC21), Virtual-only Conference, October 4-6, 2021. [PDF]


57. Shibo Li, Robert M. Kirby and Shandian Zhe, "Batch Multi-Fidelity Bayesian Optimization with Deep Auto-Regressive Networks", The 35th Conference on Neural Information Processing Systems (NeurIPS 2021), Virtual-only Conference, December 6-14, 2021. [PDF]


58. Aditi S. Krishnapriyan, Amir Gholami, Shandian Zhe, Robert M. Kirby and Michael W. Mahoney, "Characterizing possible failure modes in physics-informed neural networks", The 35th Conference on Neural Information Processing Systems (NeurIPS 2021), Virtual-only Conference, December 6-14, 2021. [PDF]


59. Han Tran, Milinda Fernando, Kumar Saurabh, Baskar Ganapathysubramanian, Robert M. Kirby and Hari Sundar, "A Scalable Adaptive-Matrix Solver for Heterogeneous Architectures", The 36th International Parallel & Distributed Processing Symposium (IPDPS 2022), Lyon, France, May 30 - June 3, 2022. [PDF]


60. Zheng Wang, Wei Xing, Robert M. Kirby and Shandian Zhe, "Physics-Informed Deep Kernel Learning", The 25th International Conference on Artificial Intelligence and Statistics (AISTATS 2022), Virtual-only Conference, March 28-30, 2022. [PDF]


61. Shibo Li, Zheng Wang, Robert M. Kirby and Shandian Zhe, "Deep Multi-Fidelity Active Learning of High-Dimensional Outputs", The 25th International Conference on Artificial Intelligence and Statistics (AISTATS 2022), Virtual-only Conference, March 28-30, 2022. [PDF]


62. Shibo Li, Robert M. Kirby and Shandian Zhe, "Decomposing Temporal High-Order Interactions via Latent ODEs", The 39th International Conference on Machine Learning (ICML 2022), Baltimore, Maryland, July 17-23, 2022. [PDF]


63. Shikai Fang, Akil Narayan, Robert M. Kirby and Shandian Zhe, "Bayesian Continuous-Time Tucker Decomposition", The 39th International Conference on Machine Learning (ICML 2022), Baltimore, Maryland, July 17-23, 2022. [PDF]


64. De Long, Zheng Wang, Aditi Krishnapriyan, Robert M. Kirby, Shandian Zhe and Michael W. Mahoney, "AutoIP: A United Framework to Integrate Physics into Gaussian Processes", The 39th International Conference on Machine Learning (ICML 2022), Baltimore, Maryland, July 17-23, 2022. [PDF]


65. Tan M. Nguyen, Richard G. Baraniuk, Robert M. Kirby, Stanley J. Osher and Bao Wang, "Momentum Transformer: Closing the Performance Gap Between Self-attention and Its Linearization", Mathematical and Scientific Machine Learning (MSML 2022), Beijing, China, August 13-21, 2022. [PDF]


66. Shibo Li, Jeff Phillips, Xin Yu, Robert M. Kirby and Shandian Zhe, "Batch Multi-Fidelity Active Learning with Budget Constraints", The 36th Annual Conference on Neural Information Processing Systems (NeurIPS 2022), New Orleans, LA, November 26-December 4, 2022. [PDF]


67. Shibo Li, Zheng Wang, Robert Kirby and Shandian Zhe, "Infinite-Fidelity Coregionalization for Physical Simulation", The 36th Annual Conference on Neural Information Processing Systems (NeurIPS 2022), New Orleans, LA, November 26-December 4, 2022. [PDF]


68. Shibo Li, Zheng Wang, Akil Narayan, Robert M. Kirby and Shandian Zhe, "Meta-Learning with Adjoint Methods", The 26th International Conference on Artificial Intelligence and Statistics (AISTATS 2023), Palau de Congressos, Valencia, Spain, April 25-27, 2023. [PDF]


69. Shibo Li, Michael Penwarden, Yiming Xu, Conor Tillinghast, Akil Narayan, Robert M. Kirby and Shandian Zhe, "Meta Learning of Interface Conditions for Multi-Domain Physics-Informed Neural Networks", The 40th International Conference on International Conference of Machine Learning (ICML 2023), Honolulu, Hawaii, USA, July 23-29, 2023. [PDF]


70. Haocheng Dai, Michael Penwarden, Robert M. Kirby and Sarang Joshi, "Neural Operator Learning for Ultrasound Tomography Inversion", Short paper at Medical Imaging with Deep Learning (MIDL 2023), Nashville, Tennessee, USA, July 10-12, 2023. [PDF]


71. Ben Charoenwong, Robert M. Kirby and Jonathan Reiter, "Risk-Free Interest Rates in Decentralized Finance", The Fifth International Conference on Blockchain Computing and Applications (BCCA 2023), Kuwait City, Kuwait, October 24-26, 2023. [PDF]


72. Shashank Subramanian, Robert M. Kirby, Michael Mahoney and Amir Gholami, "Adaptive Self-supervision Algorithms for Physics-informed Neural Networks", The 26th European Conference on Artificial Intelligence (ECAI 2023), Krakow, Poland, September 30 - October 4, 2023. [PDF]


73. Shikai Fang, Xin Yu, Shibo Li, Zheng Wang, Robert Kirby and Shandian Zhe, "Streaming Factor Trajectory Learning for Temporal Tensor Decomposition", The 37th Conference on Neural Information Processing Systems (NeurIPS 2023), New Orleans, Louisiana, December 10-16, 2023. [PDF]


74. Shikai Fang, Xin Yu, Zheng Wang, Shibo Li, Robert M. Kirby, Shandian Zhe, "Functional Bayesian Tucker Decomposition for Continuous-indexed Tensor", The 12th International Conference on Learning Representations (ICRL 2024), Vienna, Austria, May 7-11, 2024. [PDF]


75. Shikai Fang, Madison Cooley, Da Long, Shibo Li, Robert M. Kirby, Shandian Zhe, "Solving High Frequency and Multi-Scale PDEs with Gaussian Processes", The 12th International Conference on Learning Representations (ICRL 2024), Vienna, Austria, May 7-11, 2024. [PDF]


76. Shibo Li, Xin Yu, Wei W. Xing, Robert M. Kirby, Akil Narayan and Shandian Zhe, "Multi-Resolution Active Learning of Fourier Neural Operators", The 27th International Conference on Artificial Intelligence and Statistics (AISTATS 2024), Valencia, Spain, May 2-4, 2024. [PDF]


77. Da Long, Wei W. Xing, Aditi S. Krishnapriyan, Robert M. Kirby, Shandian Zhe and Michael W. Mahoney, "Equation Discovery with Bayesian Spike-and-Slab Priors and Efficient Kernels", The 27th International Conference on Artificial Intelligence and Statistics (AISTATS 2024), Valencia, Spain, May 2-4, 2024. [PDF]

 

  Other Publication Venues:

1. Kirk E. Jordan, Robert M. Kirby, Claudio Silva and Thomas J. Peters, "Through a New Looking Glass: Mathematically Precise Visualization", SIAM News, Vol. 43, Number 5, June 2010. [PDF]  


2. (Invited) Tiago Etiene, Hoa Nguyen, Robert M. Kirby and Claudio T. Silva, "'Flow Visualization' Juxtaposed With 'Visualization of Flow': Synergistic Opportunities Between Two Communities", 51st AIAA Aerospace Meeting, January 7-10, 2013. [PDF]  


3. Mary Hall, Robert M. Kirby, Feifei Li, Miriah Meyer, Valerio Pascucci, Jeff M. Phillips, Rob Ricci, Jacobus Van der Merwe and Suresh Venkatasubramanian, "Rethinking Abstractions for Big Data: Why, Where, How, and What", arXiv:1306.3295v1, 2013. [PDF]  


4. Timbwaoga Ouermi, Martin Berzins and Robert M. Kirby, "Optimization Strategies for WSM6 on KNL", IXPUG Fall 2017 Meeting, September 26-28, 2017. [PDF]  


5. Timbwaoga Ouermi, Robert M. Kirby and Martin Berzins, "Performance Optimization Techniques for Accelerating WRF Physics Codes on Intel Micro-Architectures, IXPUG Fall 2018 Meeting, September 25-28, 2018. [PDF]  

 

Last Updated: 12/02/24