Hari Sundar

Publications

A complete list of publications and citations can be found on my Google Scholar page.

Journal Articles (refereed)

  1. Kumar Saurabh, Boshun Gao, Milinda Fernando, Songzhe Xu, Makrand A Khanwale, Biswajit Khara, Ming-Chen Hsu, Adarsh Krishnamurthy, Hari Sundar, Baskar Ganapathysubramanian, Industrial scale Large Eddy Simulations with adaptive octree meshes using immersogeometric analysis Computers & Mathematics with Applications, Vol 97, Sep 2021.
  2. Max Carlson, Xiaoning Zheng, Hari Sundar, George Em Karniadakis, Robert M Kirby, An open-source parallel code for computing the spectral fractional Laplacian on 3D complex geometry domains Computer Physics Communications, Vol 261, Apr 2021.
  3. Songzhe Xu, Boshun Gao, Alec Lofquist, Milinda Fernando, Ming-Chen Hsu, Hari Sundar, Baskar Ganapathysubramanian, An octree-based immersogeometric approach for modeling inertial migration of particles in channels Computers & Fluids, Vol 214, Jan 2021.
  4. Makrand A Khanwale, Alec D Lofquist, Hari Sundar, James A Rossmanith, Baskar Ganapathysubramanian, Simulating two-phase flows with thermodynamically consistent energy stable Cahn-Hilliard Navier-Stokes equations on parallel adaptive octree based meshes Journal of Computational Physics Vol 419 Oct 2020.
  5. Khalid Ahmad, Hari Sundar, Mary Hall Data-driven mixed precision sparse matrix vector multiplication for GPUs. ACM Transactions on Architecture and Code Optimization. Vol. 16. No. 4, Article 51, 2019.
  6. Milinda Fernando, Davit Neilsen, Hyun Lim, Eric Hirschmann, Hari Sundar, Massively Parallel Simulations of Binary Black Hole Intermediate-Mass-Ratio Inspirals, SIAM Journal on Scientific Computing, 41(2), C97–C138. 2019
  7. Janan Lake, Chao, Q., Hannah Eyre, Emerson Ford, Kevin Parker, Kincaid Savoie, Hari Sundar, Mary Hall. Student Cluster Competition 2017, Team University of Utah: Reproducing Vectorization of the Tersoff Multi-Body Potential on the Intel Broadwell and Intel Skylake Platforms. Parallel computing. 79, Nov. 2018.
  8. Mark Baranowski, Brandon Caywood, Hannah Eyre, Janaan Lake, Kevin Parker, Kincaid Savoie, Hari Sundar and Mary Hall, Reproducing ParConnect for SC16. Parallel computing. 70, 2017.
  9. Amir Gholami, Dhairya Malhotra, Hari Sundar, George Biros, FFT, FMM, or Multigrid? A comparative study of state-of-the-art Poisson solvers in the unit cube, SIAM Journal on Scientific Computing 38(3), C280–C306. 2016
  10. Hari Sundar, Georg Stadler, George Biros, Comparison of multigrid algorithms for high‐order continuous finite element discretizations, Numerical Linear Algebra with Applications 22 (4), 664-680. 2015
  11. David Rivest-Henault, Hari Sundar, Mohamed Cheriet, Nonrigid 2D/3D registration of coronary artery models with live fluoroscopy for guidance of cardiac interventions, IEEE Transactions on Medical Imaging 31 (8), 1557-1572. 2012
  12. Parmeshwar Khurd, Leo Grady, Rafiou Oketokoun, Hari Sundar, Tejas Gajera, S Gibbs-Strauss, Global error minimization in image mosaicing using graph connectivity and its applications in microscopy, Journal of pathology informatics 2 (2), 8. 2012
  13. Hari Sundar, Harold Litt, Dinggang Shen, Estimating myocardial motion by 4D image warping, Pattern Recognition 42 (11), 2514-2526. 2009
  14. Hari Sundar, RS Sampath, George Biros, Bottom-up construction and 2: 1 balance refinement of linear octrees in parallel, SIAM Journal on Scientific Computing 30 (5), 2675-2708. 2008
    Over 100 Citations
  15. Charles R Bridges, Kapil Gopal, David E Holt, Charles Yarnall, Steven Cole, Rochelle B Anderson, Xiaoqing Yin, Anthony Nelson, Benjamin W Kozyak, Zhonglin Wang, James Lesniewski, Leonard T Su, Danielle M Thesier, Hari Sundar, Hansell H Stedman, Efficient myocyte gene delivery with complete cardiac surgical isolation in situ, The Journal of thoracic and cardiovascular surgery 130 (5), 1364.e1-e8. 2005

Conference Publications (refereed)

  1. Kumar Saurabh, Masado Ishii, Milinda Fernando, Boshun Gao, Kendrick Tan, Ming-Chen Hsu, Adarsh Krishnamurthy, Hari Sundar, Baskar Ganapathysubramanian, Scalable adaptive PDE solvers in arbitrary domains, Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC21).
  2. Majid Rasouli, Robert M Kirby, Hari Sundar, A Compressed, Divide and Conquer Algorithm for Scalable Distributed Matrix-Matrix Multiplication, The International Conference on High Performance Computing in Asia-Pacific Region, 2021.
  3. Max Carlson, Robert M Kirby, Hari Sundar, A scalable framework for solving fractional diffusion equations, Proceedings of the 34rd ACM on International Conference on Supercomputing (ICS20), 2020.
  4. Masado Ishii, Milinda Fernando, Kumar Saurabh, Biswajit Khara, Baskar Ganapathysubramanian, Hari Sundar, Solving PDEs in space-time: 4D tree-based adaptivity, mesh-free and matrix-free approaches Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC19)
  5. Milinda Fernando, David Neilsen, Eric Hirschmann, Hari Sundar, A scalable framework for Adaptive Computational General Relativity on Heterogeneous Clusters, Proceedings of the 33rd ACM on International Conference on Supercomputing (ICS19), 2019. Acceptance Rate: 21%
  6. Majid Rasouli, Scalable Lazy-update Multigrid Preconditioners, 2019 IEEE High Performance Extreme Computing Conference (HPEC '19)
  7. Nishith Tirpankar, Hari Sundar, Towards Triangle Counting on GPU using Stable Radix binning, 2018 IEEE High Performance Extreme Computing Conference (HPEC ‘18)
  8. Max Carlson, Hari Sundar, Utilizing GPU Parallelism to Improve Fast Spherical Harmonic Transforms, 2018 IEEE High Performance Extreme Computing Conference (HPEC ‘18)
  9. Majid Rasouli, Vidhi Zala, Robert Kirby, Hari Sundar, Improving Performance and Scalability of Algebraic Multigrid through a Specialized MATVEC, 2018 IEEE High Performance Extreme Computing Conference (HPEC ‘18)
  10. Isuru Fernando, Sanath Jayasena, Milinda Fernando, Hari Sundar, A Scalable Hierarchical Semi-Separable Library for Heterogeneous Clusters, Parallel Processing (ICPP), 46th International Conference on, 513-522, 2017. Acceptance Rate: 28%.
  11. Parmeshwar Khurd, Hari Sundar, Parallel Algorithm for the Computation of Cycles in Relative Neighborhood Graphs, Parallel Processing (ICPP), 46th International Conference on, 191-200, 2017. Acceptance Rate: 28%.
  12. Hari Sundar, Efficient Parallel Streaming Algorithms for large-scale Inverse Problems, 2017 IEEE High Performance Extreme Computing Conference (HPEC ‘17), 2017.
  13. Isuru Fernando, Sanath Jayasena, Milinda Fernando, Hari Sundar, A Scalable Hierarchical Semi-Separable Library for Heterogeneous Clusters, Parallel Processing (ICPP), 46th International Conference on, 513-522, 2017. Acceptance Rate: 28%.
  14. Parmeshwar Khurd, Hari Sundar, Parallel Algorithm for the Computation of Cycles in Relative Neighborhood Graphs, Parallel Processing (ICPP), 46th International Conference on, 191-200, 2017. Acceptance Rate: 28%.
  15. Milinda Fernando, Dmitry Duplyakin, Hari Sundar, Machine and Application Aware Partitioning for Adaptive Mesh Refinement Applications, Proceedings of the 26th International Symposium on High-Performance Parallel and Distributed Computing (HPDC'17), 2017. Acceptance Rate: 19%
  16. Hari Sundar, Omar Ghattas, A Nested Partitioning Algorithm for Adaptive Meshes on Heterogeneous Clusters, Proceedings of the 29th ACM on International Conference on Supercomputing (ICS15), 2015. Acceptance Rate: 25%
  17. Jithin Jose, Sreeram Potluri, Hari Subramoni, Xiaoyi Lu, Khaled Hamidouche, Karl Schulz, Hari Sundar, Dhabaleswar K Panda, Designing scalable out-of-core sorting with hybrid MPI+ PGAS programming models, Proceedings of the 8th International Conference on Partitioned Global Address Space Programming Models, 2014.
  18. Hari Sundar, Dhairya Malhotra, Karl W Schulz, Algorithms for high-throughput disk-to-disk sorting, Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC13), 2013. Acceptance Rate: 20%
  19. Hari Sundar, Dhairya Malhotra, George Biros, HykSort: a new variant of hypercube quicksort on distributed memory architectures, Proceedings of the 27th international ACM conference on international conference on supercomputing (ICS13), 2013. Acceptance Rate: 21%
  20. Hari Sundar, George Biros, Carsten Burstedde, Johann Rudi, Omar Ghattas, Georg Stadler, Parallel geometric-algebraic multigrid on unstructured forests of octrees, Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC12), 2012. Acceptance Rate: 22%
  21. Rahul S Sampath, Hari Sundar, Shravan K Veerapaneni, Parallel fast gauss transform, Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC10), 2010. Best Paper Finalist. Acceptance Rate: 20%
  22. Ying Zhu, Y. Tsin, Hari Sundar, Frank Sauer, Image-based respiratory motion compensation for fluoroscopic coronary roadmapping, Medical Image Computing and Computer Assisted Intervention (MICCAI), 2010. Acceptance Rate: 32%
  23. Matthias Schneider, Hari Sundar, Rui Liao, Joachim Hornegger, Chenyang Xu, Model-based respiratory motion compensation for image-guided cardiac interventions, IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2010. Acceptance Rate: 22%
  24. Matthias Schneider, Hari Sundar, Automatic global vessel segmentation and catheter removal using local geometry information and vector field integration, IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), 2010. Acceptance Rate: 15%
  25. Hari Sundar, Christos Davatzikos, George Biros, Biomechanically constrained 4D estimation of myocardial motion, Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2009. Acceptance Rate: 27%
  26. Hari Sundar, Ali Khamene, Liron Yatziv, Chenyang Xu, Automatic image-based cardiac and respiratory cycle synchronization and gating of image sequences, Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2009. Acceptance Rate: 27%
  27. Rahul S Sampath, Santi S Adavani, Hari Sundar, Ilya Lashuk, George Biros, Dendro: parallel algorithms for multigrid and AMR methods on 2: 1 balanced octrees, Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC08), 2008. Acceptance Rate: 21%
  28. Hari Sundar, Rahul S Sampath, Santi S Adavani, Christos Davatzikos, George Biros, Low-constant parallel algorithms for finite element simulations using linear octrees, Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC07), 2007. Best Student Paper Finalist. Acceptance Rate: 20%
  29. Hari Sundar, Dinggang Shen, George Biros, Chenyang Xu, Christos Davatzikos, Robust computation of mutual information using spatially adaptive meshes, Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2007. Acceptance Rate: 31%
  30. Hari Sundar, Dinggang Shen, George Biros, Harold Litt, Christos Davatzikos, Estimating myocardial fiber orientations by template warping, IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), 2006. Acceptance Rate: 35%
  31. Dinggang Shen, Hari Sundar, Zhong Xue, Yong Fan, Harold Litt, Consistent Estimation of Cardiac Motions by 4D Image Registration, Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2005. Acceptance Rate: 28%
  32. Hari Sundar, Deborah Silver, Nikhil Gagvani, Sven Dickinson, Skeleton based shape matching and retrieval, IEEE Shape Modeling International, 2003. Over 500 Citations

Theses

Other Publications

  1. Yang Gao, Hari Sundar, Coronary arteries motion modeling on 2D x-ray images, Proc. SPIE 8316, Medical Imaging 2012.
  2. Vipin Gupta, Amit Kale, Hari Sundar, A robust and accurate approach to automatic blood vessel detection and segmentation from angiography x-ray images using multistage random forests, Proc. SPIE 8315, Medical Imaging 2012.
  3. Rui Liao, Yunhao Tan, Hari Sundar, Marcus Pfister, Ali Kamen, An efficient graph-based deformable 2D/3D registration algorithm with applications for abdominal aortic aneurysm interventions, Medical Imaging and Augmented Reality, 2010.
  4. Luc Duong, Rui Liao, Hari Sundar, Benoit Tailhades, Andreas Meyer, Chenyang Xu, Curve-based 2D-3D registration of coronary vessels for image guided procedure, Proc. SPIE 7261, Medical Imaging 2009.
  5. Hari Sundar, Ali Khamene, Chenyang Xu, Frank Sauer, Christos Davatzikos, A novel 2D-3D registration algorithm for aligning fluoro images with 3D pre-op CT/MR images, Proc. SPIE 6141, Medical Imaging 2006.
  6. Deborah Silver, Hari Sundar, Nikhil Gagvani, Shape Based Culling for Volume Graphics, Proc. 13th Eurographics Workshop on Rendering, 2002.

Invited Talks

  1. Scalable Space-time adaptivity for Simulations of Binary Black Hole Intermediate-Mass-Ratio-Inspirals, Jun 5, 2019. Center for Relativistic Astrophysics, Georgia Institute of Technology, Atlanta, GA.
  2. A Scalable Framework for Adaptive Computational General Relativity on Heterogeneous Clusters, Apr 25, 2019. Oden Institute, University of Texas at Austin, Austin, TX.
  3. Scalability & Adaptivity: Achieving Conflicting Goals in a Heterogeneous Computing Era, Apr 09, 2019. Mechanical Engineering, Iowa State University, Ames, IA.
  4. dendro-GR: Enabling Adaptivity & Parallelism for Computational Relativity, Computational Challenges in Gravitational Wave Astronomy, Feb 1, 2019. IPAM, UCLA, Los Angeles, CA
  5. Parallel Fast Gauss Transform, SIAM PP'18, Mar 7, 2018, Waseda University, Tokyo, Japan.
  6. Efficient Parallel Streaming Algorithms for large-scale Inverse Problems - September 13, 2017 - IEEE High Performance Extreme Computing Conference, Waltham, MA
  7. Parallel Algorithms for the Computation of Cycles in Relative Neighborhood Graphs - August 16, 2017 - 46th International Conference on Parallel Processing, Bristol, UK
  8. Challenges in Parallelizing Adaptive High-order Geometric Multigrid, 17th Copper Mountain Conference on Multigrid Methods, Copper Mountain, CO Mar 2015.
  9. Parallel $hp$-Multigrid for HDG, SIAM Conference on Computational Science and Engineering, Salt Lake City, UT Feb 2015.
  10. A Nested Partioning Scheme for Adaptive Meshes on Parallel Heterogeneous Clusters, SIAM Conference on Parallel Processing for Scientific Computing, Portland, OR Feb 2014.
  11. Geometric Multigrid for high-order discretizations, 16th Copper Mountain Conference on Multigrid Methods, Copper Mountain, CO Mar 2013.
  12. Parallelization Strategies for High-order Discretized Hyperbolic PDEs, SIAM Conference on Computational Science and Engineering, Boston, MA Feb 2013.
  13. Applications of projective registration for peripheral CTO, Interventional Radiology, University of Virginia Medical Center, Charlottesville, VA 2010.
  14. Image-based guidance for the crossing of Chronic Total Occlusions, Thoraxcentrum, Erasmus Medical Center, Rotterdam, Netherlands Aug 2009.
  15. A biomechanical model of the human heart incorporating myocardial fiber orientations, NSF ERC, Computer-Integrated Surgical Systems and Technology, Johns Hopkins University, Baltimore, MD Oct 2008.

Patents

Full list, including pending applications can be found here.

  1. Medical imaging system, US 8422754 B2, Issued Apr 16, 2013.
  2. Medical imaging system for segementing blood vessel, US 8488852 B2, Issued Jul 16, 2013.
  3. Method and system of affine registration of inter-operative two dimensional images and pre-operative three dimensional images, US 7450743 B2, Issued Nov 11, 2008
  4. Hierarchical atlas-based segmentation, US 8861891 B2, Issued Oct 14, 2014.
  5. Global error minimization in image mosaicking using graph laplacians and its applications in microscopy, US 8983230 B2, Issued Mar 17, 2015.
  6. System and method for robust 2D-3D image registration, US 8457373 B2, Issued Jun 4, 2013.
  7. Deformable 2D-3D registration of structure, US 8494243 B2, Issued Jul 23, 2013.
  8. Coronary artery motion modeling, US 8849005 B2, Issued Sep 30, 2014.
  9. Network cycle features in relative neighborhood graphs, US 9047660 B2, Issued Jun 2, 2015.
  10. System and method for image-based respiratory motion compensation for fluoroscopic coronary roadmapping, US 8798347 B2, Issued Aug 5, 2014.
  11. Non-rigid 2D/3D registration of coronary artery models with live fluoroscopy images, US 8948487 B2, Issued Feb 3, 2015.